Twelve novel polymorphic microsatellite loci were isolated and characterized for the Iberian ribbed newt, Pleurodeles waltl (Caudata, Salamandridae). The distribution of this newt ranges from central and southern Iberia to northwestern Morocco. Polymorphism of these novel loci was tested in 40 individuals from two Iberian populations and compared with previously published markers. The number of alleles per locus ranged from two to eight. Observed and expected heterozygosity ranged from 0.13 to 0.57 and from 0.21 to 0.64, respectively. Cross-species amplification was tested in Pleurodeles nebulosus, which is listed as Vulnerable by the IUCN. Eight new and seven previously published loci amplified successfully in that species and thus represent a valuable conservation tool. The novel microsatellites will be useful for a better understanding of the population dynamics, demography, genetic structure, and evolutionary history of Pleurodeles waltl and P. nebulosus.
Beja P., Bosch J., Tejedo M., Edgar P., Donaire-Barroso D., Lizana M., Martínez-Solano I., Salvador A., García-París M., Recuero Gil E., Slimani T., El Mouden E.H., Geniez P. (2009): Pleurodeles waltl. In: IUCN 2012. IUCN Red List of Threatened Species. Version 2012.2. http://www.iucnredlist.org. Accessed 3 June 2013.
Beukema W., De Pous P., Donaire-Barroso D., Bogaerts S., García-Porta J., Escoriza D., Arribas O.J., El Mouden E.H., Carranza S. (2013): Review of the systematics, distribution, biogeography and natural history of Moroccan amphibians. Zootaxa 3661: 1-60.
Busack S.D. (1986): Biogeographic analysis of the herpetofauna separated by the formation of the Strait of Gibraltar. Natl. Geogr. Res. 2: 17-36.
Carranza S., Arnold E.N. (2004): History of West Mediterranean newts, Pleurodeles (Amphibia: Salamandridae), inferred from old and recent DNA sequences. Syst. Biodivers. 1: 327-337.
Donaire-Barroso D., Salvador A., Slimani T., El Mouden E.H., Geniez P., Mateo J.A. (2006): Pleurodeles nebulosus. In: IUCN 2012. IUCN Red List of Threatened Species. Version 2012.2. http://www.iucnredlist.org. Accessed 19 June 2013.
Ellegren H. (2004): Microsatellites: simple sequences with complex evolution. Nat. Rev. Genet. 5: 435-445.
Geniez P., Mateo J.A. (2006): Pleurodeles poireti. In: IUCN 2012. IUCN Red List of Threatened Species. Version 2012.2. http://www.iucnredlist.org. Accessed 19 June 2013.
Guo S.W., Thompson E.A. (1992): A Monte Carlo method for combined segregation and linkage analysis. Am. J. Hum. Genet. 51: 1111-1126.
Hamilton M.B., Pincus E.L., Di Fiore A., Fleischer R.C. (1999): Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. BioTechniques 27: 500-507.
Holleley C.E., Geerts P.G. (2009): Multiplex Manager 1.0: a cross-platform computer program that plans and optimizes multiplex PCR. BioTechniques 46: 511-517.
Montori A., Llorente G.A., Santos X., Carretero M.A. (2002): Pleurodeles waltl Michahelles, 1830. Gallipato. In: Atlas y Libro Rojo de los Anfibios y Reptiles de España, p. 51-53. Pleguezuelos J.M., Márquez R., Lizana M., Eds, Dirección General de Conservación de la Naturaleza-Asociación Herpetológica Española, Madrid, Spain.
Nair A., Gopalan S.V., George S., Kumar K.S., Merilä J. (2012): Cross-species testing and utility of microsatellite loci in Indirana frogs. BMC Res. Notes 5: 389.
Peakall R., Smouse P.E. (2006): Genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecol. Notes 6: 288-295.
Rice W.R. (1989): Analyzing tables of statistical tests. Evolution 43: 223-225.
Rousset F. (2008): Genepop’007: a complete re-implementation of the genepop software for Windows and Linux. Mol. Ecol. Resources 8: 103-106.
Salvador A. (2002): Gallipato – Pleurodeles waltl. In: Enciclopedia Virtual de los Vertebrados Españoles. Carrascal L.M., Salvador A., Eds, Museo Nacional de Ciencias Naturales, Madrid. http://www.vertebradosibericos.org. Accessed 19 June 2013.
Untergasser A., Nijveen H., Rao X., Bisseling T., Geurts R., Leunissen J.A.M. (2007): Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Res. 35: 71-74.
Van Oosterhout C., Hutchinson W.F., Wills D.P.M., Shipley P. (2004): Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538.
Veith M., Mayer C., Samraoui B., Barroso D.D., Bogaerts S. (2004): From Europe to Africa and vice versa: evidence for multiple intercontinental dispersal in ribbed salamanders (Genus Pleurodeles). J. Biogeogr. 31: 159-171.
Vliet M.S.V.d., Diekmann O.E., Serrão E.A., Beja P. (2009): Isolation of highly polymorphic microsatellite loci for a species with a large genome size: sharp-ribbed salamander (Pleurodeles waltl). Mol. Ecol. Resources 9: 425-428.
All Time | Past 365 days | Past 30 Days | |
---|---|---|---|
Abstract Views | 163 | 0 | 0 |
Full Text Views | 345 | 66 | 9 |
PDF Views & Downloads | 107 | 20 | 5 |
Twelve novel polymorphic microsatellite loci were isolated and characterized for the Iberian ribbed newt, Pleurodeles waltl (Caudata, Salamandridae). The distribution of this newt ranges from central and southern Iberia to northwestern Morocco. Polymorphism of these novel loci was tested in 40 individuals from two Iberian populations and compared with previously published markers. The number of alleles per locus ranged from two to eight. Observed and expected heterozygosity ranged from 0.13 to 0.57 and from 0.21 to 0.64, respectively. Cross-species amplification was tested in Pleurodeles nebulosus, which is listed as Vulnerable by the IUCN. Eight new and seven previously published loci amplified successfully in that species and thus represent a valuable conservation tool. The novel microsatellites will be useful for a better understanding of the population dynamics, demography, genetic structure, and evolutionary history of Pleurodeles waltl and P. nebulosus.
All Time | Past 365 days | Past 30 Days | |
---|---|---|---|
Abstract Views | 163 | 0 | 0 |
Full Text Views | 345 | 66 | 9 |
PDF Views & Downloads | 107 | 20 | 5 |