Akatsu, H., Iwabuchi, N., Xiao, J.Z., Matsuyama, Z., Kurihara, R., Okuda, K., Yamamoto, T. and Maruyama, M., 2013. Clinical effects of probiotic Bifidobacterium longum BB536 on immune function and intestinal microbiota in elderly patients receiving enteral tube feeding. Journal of Parenteral and Enteral Nutrition 37: 631-640.

'Clinical effects of probiotic Bifidobacterium longum BB536 on immune function and intestinal microbiota in elderly patients receiving enteral tube feeding ' () 37 Journal of Parenteral and Enteral Nutrition : 631 -640.

Clinical effects of probiotic Bifidobacterium longum BB536 on immune function and intestinal microbiota in elderly patients receiving enteral tube feedingJournal of Parenteral and Enteral Nutrition37631640)| false
• Search Google Scholar

Aronesty, E., 2013. Comparison of sequencing utility programs. Open Bioinformatics Journal 7: 1-8.

'Comparison of sequencing utility programs ' () 7 Open Bioinformatics Journal : 1 -8.

Comparison of sequencing utility programsOpen Bioinformatics Journal718)| false
• Search Google Scholar

Bailey, M.T., Dowd, S.E., Galley, J.D., Hufnagle, A.R., Allen, R.G. and Lyte, M., 2011. Exposure to a social stressor alters the structure of the intestinal microbiota: implications for stressor-induced immunomodulation. Brain, Behavior, and Immunity 25: 397-407.

'Exposure to a social stressor alters the structure of the intestinal microbiota: implications for stressor-induced immunomodulation ' () 25 Brain, Behavior, and Immunity : 397 -407.

Exposure to a social stressor alters the structure of the intestinal microbiota: implications for stressor-induced immunomodulationBrain, Behavior, and Immunity25397407)| false
• Search Google Scholar

Bangsgaard Bendtsen, K.M., Krych, L., Sørensen, D.B., Pang, W., Nielsen, D.S., Josefsen, K., Hansen, L.H., Sørensen, S.J. and Hansen, A.K., 2012. Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse. PLoS ONE 7: e46231.

'Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse ' () 7 PLoS ONE : e46231.

Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mousePLoS ONE7e46231)| false
• Search Google Scholar

Begley, M., Hill, C., Gahan, C.G., 2006. Bile salt hydrolase activity in probiotics. Applied Environmental Microbiology 72: 1729-1738.

'Bile salt hydrolase activity in probiotics ' () 72 Applied Environmental Microbiology : 1729 -1738.

Bile salt hydrolase activity in probioticsApplied Environmental Microbiology7217291738)| false
• Search Google Scholar

Benjamin, J.L., Hedin, C.R., Koutsoumpas, A., Ng, S.C., McCarthy, N.E., Prescott, N.J., Pessoa-Lopes, P., Mathew, C.G., Sanderson, J., Hart, A.L., Kamm, M.A., Knight, S.C., Forbes, A., Stagg, A.J., Lindsay, J.O. and Whelan, K., 2012. Smokers with active Crohn’s disease have a clinically relevant dysbiosis of the gastrointestinal microbiota. Inflammatory Bowel Diseases 18: 1092-1100.

'Smokers with active Crohn’s disease have a clinically relevant dysbiosis of the gastrointestinal microbiota ' () 18 Inflammatory Bowel Diseases : 1092 -1100.

Smokers with active Crohn’s disease have a clinically relevant dysbiosis of the gastrointestinal microbiotaInflammatory Bowel Diseases1810921100)| false
• Search Google Scholar

Benno, Y., 1990. Effect of diets on human fecal microflora. Bifidobacteria and Microflora 4: 1-12.

'Effect of diets on human fecal microflora ' () 4 Bifidobacteria and Microflora : 1 -12.

Effect of diets on human fecal microfloraBifidobacteria and Microflora4112)| false
• Search Google Scholar

Benno, Y., Suzuki, K., Narisawa, K., Bruce, W.R. and Mitsuoka, T., 1986. Comparison of the fecal microflora in rural Japanese and urban Canadians. Microbiology and Immunology 30: 521-532.

'Comparison of the fecal microflora in rural Japanese and urban Canadians ' () 30 Microbiology and Immunology : 521 -532.

Comparison of the fecal microflora in rural Japanese and urban CanadiansMicrobiology and Immunology30521532)| false
• Search Google Scholar

Bermudez-Brito, M., Muñoz-Quezada, S., Gomez-Llorente, C., Matencio, E., Bernal, M.J., Romero, F. and Gil, A., 2013. Cell-free culture supernatant of Bifidobacterium breve CNCM I-4035 decreases pro-inflammatory cytokines in human dendritic cells challenged with Salmonella Typhi through TLR activation. PLoS ONE 8: e59370.

'Cell-free culture supernatant of Bifidobacterium breve CNCM I-4035 decreases pro-inflammatory cytokines in human dendritic cells challenged with Salmonella Typhi through TLR activation ' () 8 PLoS ONE : e59370.

Cell-free culture supernatant of Bifidobacterium breve CNCM I-4035 decreases pro-inflammatory cytokines in human dendritic cells challenged with Salmonella Typhi through TLR activationPLoS ONE8e59370)| false
• Search Google Scholar

Caporaso, J.G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F.D., Costello, E.K., Fierer, N., Peña, A.G., Goodrich, J.K., Gordon, J.I., Huttley, G.A., Kelley, S.T., Knights, D., Koenig, J.E., Ley, R.E., Lozupone, C.A., McDonald, D., Muegge, B.D., Pirrung, M., Reeder, J., Sevinsky, J.R., Turnbaugh, P.J., Walters, W.A., Widmann, J., Yatsunenko, T., Zaneveld, J. and Knight, R., 2010. QIIME allows analysis of high-throughput community sequencing data. Nature Methods 7: 335-336.

'QIIME allows analysis of high-throughput community sequencing data ' () 7 Nature Methods : 335 -336.

QIIME allows analysis of high-throughput community sequencing dataNature Methods7335336)| false
• Search Google Scholar

Carr, P.R., Walter, V., Brenner, H. and Hoffmeister, M., 2016. Meat subtypes and their association with colorectal cancer: systematic review and meta-analysis. International Journal of Cancer 138: 293-302.

'Meat subtypes and their association with colorectal cancer: systematic review and meta-analysis ' () 138 International Journal of Cancer : 293 -302.

Meat subtypes and their association with colorectal cancer: systematic review and meta-analysisInternational Journal of Cancer138293302)| false
• Search Google Scholar

Chao, A., Thun, M.J., Connell, C.J., McCullough, M.L., Jacobs, E.J., Flanders, W.D., Rodriguez, C., Sinha, R. and Calle, E.E., 2005. Meat consumption and risk of colorectal cancer. Journal of the American Medical Association 293: 172-182.

'Meat consumption and risk of colorectal cancer ' () 293 Journal of the American Medical Association : 172 -182.

Meat consumption and risk of colorectal cancerJournal of the American Medical Association293172182)| false
• Search Google Scholar

Clarke, S.F., Murphy, E.F., O’Sullivan, O., Lucey, A.J., Humphreys, M., Hogan, A., Hayes, P., O’Reilly, M., Jeffery, I.B., Wood-Martin, R., Kerins, D.M., Quigley, E., Ross, R.P., O’Toole, P.W., Molloy, M.G., Falvey, E., Shanahan, F. and Cotter, P.D., 2014. Exercise and associated dietary extremes impact on gut microbial diversity. Gut 63: 1913-1920.

'Exercise and associated dietary extremes impact on gut microbial diversity ' () 63 Gut : 1913 -1920.

Exercise and associated dietary extremes impact on gut microbial diversityGut6319131920)| false
• Search Google Scholar

Conlon, M.A. and Bird, A.R., 2015. The impact of diet and lifestyle on gut microbiota and human health. Nutrients 7: 17-44.

'The impact of diet and lifestyle on gut microbiota and human health ' () 7 Nutrients : 17 -44.

The impact of diet and lifestyle on gut microbiota and human healthNutrients71744)| false
• Search Google Scholar

David, L.A., Materna, A.C., Friedman, J., Campos-Baptista, M.I., Blackburn, M.C., Perrotta, A., Erdman, S.E. and Alm, E.J., 2014a. Host lifestyle affects human microbiota on daily timescales. Genome Biology 15: R89.

'Host lifestyle affects human microbiota on daily timescales ' () 15 Genome Biology : R89.

Host lifestyle affects human microbiota on daily timescalesGenome Biology15R89)| false
• Search Google Scholar

David, L.A., Maurice, C.F., Carmody, R.N., Gootenberg, D.B., Button, J.E., Wolfe, B.E., Ling, A.V., Devlin, A.S., Varma, Y., Fischbach, M.A., Biddinger, S.B., Dutton, R.J. and Turnbaugh, P.J., 2014b. Diet rapidly and reproducibly alters the human gut microbiome. Nature 505: 559-563.

'Diet rapidly and reproducibly alters the human gut microbiome ' () 505 Nature : 559 -563.

Diet rapidly and reproducibly alters the human gut microbiomeNature505559563)| false
• Search Google Scholar

De Filippo, C., Cavalieri, D., Di, P.A.M., Ramazzotti, M., Poullet, J.B., Massart, S., Collini, S., Pieraccini, G. and Lionetti, P., 2010. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proceedings of the National Academy of Sciences of the USA 107: 14691-14696.

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa Proceedings of the National Academy of Sciences of the USA 107 14691 14696

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural AfricaProceedings of the National Academy of Sciences of the USA1071469114696)| false
• Search Google Scholar

Devkota, S., Wang, Y., Musch, M.W., Leone, V., Fehlner-Peach, H., Nadimpalli, A., Antonopoulos, D.A., Jabri, B. and Chang, E.B., 2012. Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- mice. Nature 487: 104-108.

'Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- mice ' () 487 Nature : 104 -108.

Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- miceNature487104108)| false
• Search Google Scholar

Dimidi, E., Christodoulides, S., Fragkos, K.C., Scott, S.M. and Whelan, K., 2014. The effect of probiotics on functional constipation in adults: a systematic review and meta-analysis of randomized controlled trials. American Journal of Clinical Nutrition 100: 1075-1084.

'The effect of probiotics on functional constipation in adults: a systematic review and meta-analysis of randomized controlled trials ' () 100 American Journal of Clinical Nutrition : 1075 -1084.

The effect of probiotics on functional constipation in adults: a systematic review and meta-analysis of randomized controlled trialsAmerican Journal of Clinical Nutrition10010751084)| false
• Search Google Scholar

Edgar, R.C., Haas, B.J., Clemente, J.C., Quince, C. and Knight, R., 2011. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27: 2194-2200.

'UCHIME improves sensitivity and speed of chimera detection ' () 27 Bioinformatics : 2194 -2200.

UCHIME improves sensitivity and speed of chimera detectionBioinformatics2721942200)| false
• Search Google Scholar

Eloe-Fadrosh, E.A., Brady, A., Crabtree, J., Drabek, E.F., Ma, B., Mahurkar, A., Ravel, J., Haverkamp, M., Fiorino, A.M., Botelho, C., Andreyeva, I., Hibberd, P.L., Fraser, C.M., 2015. Functional dynamics of the gut microbiome in elderly people during probiotic consumption. MBio 6: e00231-15.

'Functional dynamics of the gut microbiome in elderly people during probiotic consumption ' () 6 MBio : e00231 -15.

Functional dynamics of the gut microbiome in elderly people during probiotic consumptionMBio6e0023115)| false
• Search Google Scholar

Faith, J.J., Guruge, J.L., Charbonneau, M., Subramanian, S., Seedorf, H., Goodman, A.L., Clemente, J.C., Knight, R., Heath, A.C., Leibel, R.L., Rosenbaum, M. and Gordon, J.I., 2014. The long-term stability of the human gut microbiota. Science 341: 1237439.

'The long-term stability of the human gut microbiota ' () 341 Science : 1237439.

The long-term stability of the human gut microbiotaScience3411237439)| false
• Search Google Scholar

Fujimoto, J., Tanigawa, K., Kudo, Y., Makino, H. and Watanabe, K., 2011. Identification and quantification of viable Bifidobacterium breve strain Yakult in human faeces by using strain-specific primers and propidium monoazide. Journal of Applied Microbiology 110: 209-217.

'Identification and quantification of viable Bifidobacterium breve strain Yakult in human faeces by using strain-specific primers and propidium monoazide ' () 110 Journal of Applied Microbiology : 209 -217.

Identification and quantification of viable Bifidobacterium breve strain Yakult in human faeces by using strain-specific primers and propidium monoazideJournal of Applied Microbiology110209217)| false
• Search Google Scholar

Göker, M., Gronow, S., Zeytun, A., Nolan, M., Lucas, S., Lapidus, A., Hammon, N., Deshpande, S., Cheng, J.F., Pitluck, S., Liolios, K., Pagani, I., Ivanova, N., Mavromatis, K., Ovchinikova, G., Pati, A., Tapia, R., Han, C., Goodwin, L., Chen, A., Palaniappan, K., Land, M., Hauser, L., Jeffries, C.D., Brambilla, E.M., Rohde, M., Detter, J.C., Woyke, T., Bristow, J., Markowitz, V., Hugenholtz, P., Eisen, J.A., Kyrpides, N.C. and Klenk, H.P., 2011. Complete genome sequence of Odoribacter splanchnicus type strain (1651/6). Standards in Genomic Sciences 4: 200-209.

'Complete genome sequence of Odoribacter splanchnicus type strain (1651/6) ' () 4 Standards in Genomic Sciences : 200 -209.

Complete genome sequence of Odoribacter splanchnicus type strain (1651/6)Standards in Genomic Sciences4200209)| false
• Search Google Scholar

Grill, J.P., Manginot-Dürr, C., Schneider, F. and Ballongue, J., 1995. Bifidobacteria and probiotic effects: action of Bifidobacterium species on conjugated bile salts. Current Microbiology 31: 23-27.

'Bifidobacteria and probiotic effects: action of Bifidobacterium species on conjugated bile salts ' () 31 Current Microbiology : 23 -27.

Bifidobacteria and probiotic effects: action of Bifidobacterium species on conjugated bile saltsCurrent Microbiology312327)| false
• Search Google Scholar

Groeger, D., O’Mahony, L., Murphy, E.F., Bourke, J.F., Dinan, T.G., Kiely, B., Shanahan, F. and Quigley, E.M., 2013. Bifidobacterium infantis 35624 modulates host inflammatory processes beyond the gut. Gut Microbes 4: 325-339.

'Bifidobacterium infantis 35624 modulates host inflammatory processes beyond the gut ' () 4 Gut Microbes : 325 -339.

Bifidobacterium infantis 35624 modulates host inflammatory processes beyond the gutGut Microbes4325339)| false
• Search Google Scholar

Hardham, J.M., King, K.W., Dreier, K., Wong, J., Strietzel, C., Eversole, R.R., Sfintescu, C. and Evans, R.T., 2008. Transfer of Bacteroides splanchnicus to Odoribacter gen. nov. as Odoribacter splanchnicus comb. nov., and description of Odoribacter denticanis sp. nov., isolated from the crevicular spaces of canine periodontitis patients. International Journal of Systemic and Evolutionary Microbiology 58: 103-109.

'Transfer of Bacteroides splanchnicus to Odoribacter gen. nov. as Odoribacter splanchnicus comb. nov., and description of Odoribacter denticanis sp. nov., isolated from the crevicular spaces of canine periodontitis patients ' () 58 International Journal of Systemic and Evolutionary Microbiology : 103 -109.

Transfer of Bacteroides splanchnicus to Odoribacter gen. nov. as Odoribacter splanchnicus comb. nov., and description of Odoribacter denticanis sp. nov., isolated from the crevicular spaces of canine periodontitis patientsInternational Journal of Systemic and Evolutionary Microbiology58103109)| false
• Search Google Scholar

Hughes, R., Magee, E.A. and Bingham, S., 2000. Protein degradation in the large intestine: relevance to colorectal cancer. Current Issues in Intestinal Microbiology 1: 51-58.

'Protein degradation in the large intestine: relevance to colorectal cancer ' () 1 Current Issues in Intestinal Microbiology : 51 -58.

Protein degradation in the large intestine: relevance to colorectal cancerCurrent Issues in Intestinal Microbiology15158)| false
• Search Google Scholar

Jackson, H.T., Mongodin, E.F., Davenport, K.P., Fraser, C.M., Sandler, A.D. and Zeichner, S.L., 2014. Culture-independent evaluation of the appendix and rectum microbiomes in children with and without appendicitis. PLoS ONE 9: e95414.

'Culture-independent evaluation of the appendix and rectum microbiomes in children with and without appendicitis ' () 9 PLoS ONE : e95414.

Culture-independent evaluation of the appendix and rectum microbiomes in children with and without appendicitisPLoS ONE9e95414)| false
• Search Google Scholar

Joossens, M., Huys, G., Cnockaert, M., De Preter, V., Verbeke, K., Rutgeerts, P., Vandamme, P. and Vermeire, S., 2011. Dysbiosis of the faecal microbiota in patients with Crohn’s disease and their unaffected relatives. Gut 60: 631-637.

'Dysbiosis of the faecal microbiota in patients with Crohn’s disease and their unaffected relatives ' () 60 Gut : 631 -637.

Dysbiosis of the faecal microbiota in patients with Crohn’s disease and their unaffected relativesGut60631637)| false
• Search Google Scholar

King, S., Glanville, J., Sanders, M.E., Fitzgerald, A. and Varley, D., 2014. Effectiveness of probiotics on the duration of illness in healthy children and adults who develop common acute respiratory infectious conditions: a systematic review and meta-analysis. British Journal of Nutrition 112: 41-54.

'Effectiveness of probiotics on the duration of illness in healthy children and adults who develop common acute respiratory infectious conditions: a systematic review and meta-analysis ' () 112 British Journal of Nutrition : 41 -54.

Effectiveness of probiotics on the duration of illness in healthy children and adults who develop common acute respiratory infectious conditions: a systematic review and meta-analysisBritish Journal of Nutrition1124154)| false
• Search Google Scholar

Kuczynski, J., Stombaugh, J., Walters, W.A., González, A., Caporaso, J.G. and Knight, R., 2012. Using QIIME to analyze 16S rRNA gene sequences from microbial communities. Current Protocols in Bioinformatics 36: Unit 10.7. DOI: http://10.1002/0471250953.bi1007s36.

Laue, H., Denger, K. and Cook, A.M., 1997. Taurine reduction in anaerobic respiration of Bilophila wadsworthia Rzatau. Applied Environmental Microbiology 63: 2016-2021.

'Taurine reduction in anaerobic respiration of Bilophila wadsworthia Rzatau ' () 63 Applied Environmental Microbiology : 2016 -2021.

Taurine reduction in anaerobic respiration of Bilophila wadsworthia RzatauApplied Environmental Microbiology6320162021)| false
• Search Google Scholar

Lutgendorff, F., Akkermans, L.M. and Söderholm, J.D., 2008. The role of microbiota and probiotics in stress-induced gastro-intestinal damage. Current Molecular Medicine 8: 282-298.

'The role of microbiota and probiotics in stress-induced gastro-intestinal damage ' () 8 Current Molecular Medicine : 282 -298.

The role of microbiota and probiotics in stress-induced gastro-intestinal damageCurrent Molecular Medicine8282298)| false
• Search Google Scholar

McDonald, D., Price, M.N., Goodrich, J., Nawrocki, E.P., DeSantis, T.Z., Probst, A., Andersen, G.L., Knight, R. and Hugenholtz, P., 2011. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME Journal 6: 610-618.

'An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea ' () 6 ISME Journal : 610 -618.

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaeaISME Journal6610618)| false
• Search Google Scholar

McNulty, N.P., Yatsunenko, T., Hsiao, A., Faith, J.J., Muegge, B.D., Goodman, A.L., Henrissat, B., Oozeer, R., Cools-Portier, S., Gobert, G., Chervaux, C., Knights, D., Lozupone, C.A., Knight, R., Duncan, A.E., Bain, J.R., Muehlbauer, M.J., Newgard, C.B., Heath, A.C. and Gordon, J.I., 2011. The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. Science Translational Medicine 3: 106ra106.

'The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins ' () 3 Science Translational Medicine : 106ra106.

The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twinsScience Translational Medicine3106ra106)| false
• Search Google Scholar

Moore, W.E. and Holdeman, L.V., 1974. Human fecal flora: the normal flora of 20 Japanese-Hawaiians. Applied Microbiology 27: 961-979.

'Human fecal flora: the normal flora of 20 Japanese-Hawaiians ' () 27 Applied Microbiology : 961 -979.

Human fecal flora: the normal flora of 20 Japanese-HawaiiansApplied Microbiology27961979)| false
• Search Google Scholar

Muegge, B.D., Kuczynski, J., Knights, D., Clemente, J.C., González, A., Fontana, L., Henrissat, B., Knight, R. and Gordon, J.I., 2011. Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science 332: 970-974.

'Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans ' () 332 Science : 970 -974.

Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humansScience332970974)| false
• Search Google Scholar

Odamaki, T., Xiao, J.-Z., Iwabuchi, N., Sakamoto, M., Takahashi, N., Kondo, S., Miyaji, K., Iwatsuki, K., Togashi, H., Enomoto, T. and Benno, Y., 2007a. Influence of Bifidobacterium longum BB536 intake on faecal microbiota in individuals with Japanese cedar pollinosis during the pollen season. Journal of Medical Microbiology 56: 1301-1308.

'Influence of Bifidobacterium longum BB536 intake on faecal microbiota in individuals with Japanese cedar pollinosis during the pollen season ' () 56 Journal of Medical Microbiology : 1301 -1308.

Influence of Bifidobacterium longum BB536 intake on faecal microbiota in individuals with Japanese cedar pollinosis during the pollen seasonJournal of Medical Microbiology5613011308)| false
• Search Google Scholar

Odamaki, T., Xiao, J., Iwabuchi, N., Sakamoto, M., Takahashi, N., Kondo, S., Iwatsuki, K., Kokubo, S., Togashi, H., Enomoto, T. and Benno, Y., 2007b. Fluctuation of fecal microbiota in individuals with Japanese cedar pollinosis during the pollen season and influence of probiotic intake. Journal of Investigative Allergology and Clinical Immunology 17: 92-100.

'Fluctuation of fecal microbiota in individuals with Japanese cedar pollinosis during the pollen season and influence of probiotic intake ' () 17 Journal of Investigative Allergology and Clinical Immunology : 92 -100.

Fluctuation of fecal microbiota in individuals with Japanese cedar pollinosis during the pollen season and influence of probiotic intakeJournal of Investigative Allergology and Clinical Immunology1792100)| false
• Search Google Scholar

Png, C.W., Lindén, S.K., Gilshenan, K.S., Zoetendal, E.G., McSweeney, C.S., Sly, L.I., McGuckin, M.A. and Florin, T.H., 2010. Mucolytic bacteria with increased prevalence in IBD mucosa augment in vitro utilization of mucin by other bacteria. American Journal of Gastroenterology 105: 2420-2428.

'Mucolytic bacteria with increased prevalence in IBD mucosa augment in vitro utilization of mucin by other bacteria ' () 105 American Journal of Gastroenterology : 2420 -2428.

Mucolytic bacteria with increased prevalence in IBD mucosa augment in vitro utilization of mucin by other bacteriaAmerican Journal of Gastroenterology10524202428)| false
• Search Google Scholar

Rajilic-Stojanovic, M., Biagi, E., Heilig, H.G., Kajander, K., Kekkonen, R.A., Tims, S. and De Vos, W.M., 2011. Global and deep molecular analysis of microbiota signatures in fecal samples from patients with irritable bowel syndrome. Gastroenterology 141: 1792-1801.

'Global and deep molecular analysis of microbiota signatures in fecal samples from patients with irritable bowel syndrome ' () 141 Gastroenterology : 1792 -1801.

Global and deep molecular analysis of microbiota signatures in fecal samples from patients with irritable bowel syndromeGastroenterology14117921801)| false
• Search Google Scholar

Raman, M., Ahmed, I., Gillevet, P.M., Probert, C.S., Ratcliffe, N.M., Smith, S., Greenwood, R., Sikaroodi, M., Lam, V., Crotty, P., Bailey, J., Myers, R.P. and Rioux, K.P., 2013. Fecal microbiome and volatile organic compound metabolome in obese humans with nonalcoholic fatty liver disease. Clinical Gastroenterology and Hepatology 11: 868-875.

'Fecal microbiome and volatile organic compound metabolome in obese humans with nonalcoholic fatty liver disease ' () 11 Clinical Gastroenterology and Hepatology : 868 -875.

Fecal microbiome and volatile organic compound metabolome in obese humans with nonalcoholic fatty liver diseaseClinical Gastroenterology and Hepatology11868875)| false
• Search Google Scholar

Ridlon, J.M., Kang, D.-J. and Hylemon, P.B., 2006. Bile salt biotransformations by human intestinal bacteria. Journal of Lipid Research 47: 241-259.

'Bile salt biotransformations by human intestinal bacteria ' () 47 Journal of Lipid Research : 241 -259.

Bile salt biotransformations by human intestinal bacteriaJournal of Lipid Research47241259)| false
• Search Google Scholar

Sagar, S., Vos, A.P., Morgan, M.E., Garssen, J., Georgiou, N.A., Boon, L., Kraneveld, A.D. and Folkerts, G., 2014. The combination of Bifidobacterium breve with non-digestible oligosaccharides suppresses airway inflammation in a murine model for chronic asthma. Biochimica and Biophysica Acta 1842: 573-583.

'The combination of Bifidobacterium breve with non-digestible oligosaccharides suppresses airway inflammation in a murine model for chronic asthma ' () 1842 Biochimica and Biophysica Acta : 573 -583.

The combination of Bifidobacterium breve with non-digestible oligosaccharides suppresses airway inflammation in a murine model for chronic asthmaBiochimica and Biophysica Acta1842573583)| false
• Search Google Scholar

Schloss, P.D., 2013. The gut microbiome modulates colon tumorigenesis. MBio 4: e00692-13.

'The gut microbiome modulates colon tumorigenesis ' () 4 MBio : e00692 -13.

The gut microbiome modulates colon tumorigenesisMBio4e0069213)| false
• Search Google Scholar

Shen, X.J., Rawls, J.F., Randall, T., Burcal, L., Mpande, C.N., Jenkins, N., Jovov, B., Abdo, Z., Sandler, R.S. and Keku, T.O., 2010. Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas. Gut Microbes 1: 138-147.

'Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas ' () 1 Gut Microbes : 138 -147.

Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomasGut Microbes1138147)| false
• Search Google Scholar

Silvester, K.R. and Cummings, J.H., 1995. Does digestibility of meat protein help explain large bowel cancer risk? Nutrition and Cancer 24: 279-288.

'Does digestibility of meat protein help explain large bowel cancer risk? ' () 24 Nutrition and Cancer : 279 -288.

Does digestibility of meat protein help explain large bowel cancer risk?Nutrition and Cancer24279288)| false
• Search Google Scholar

Storey, J.D., Taylor, J.E. and Siegmund, D., 2004. Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unified approach. Journal of the Royal Statistical Society B 66 Part 1: 187-205.

'Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unified approach ' () 1 Journal of the Royal Statistical Society B 66 Part : 187 -205.

Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unified approachJournal of the Royal Statistical Society B 66 Part1187205)| false
• Search Google Scholar

Sugahara, H., Odamaki, T., Fukuda, S., Kato, T., Xiao, J.Z., Abe, F., Kikuchi, J. and Ohno, H., 2015. Probiotic Bifidobacterium longum alters gut luminal metabolism through modification of the gut microbial community. Scientific Report 28: 13548.

'Probiotic Bifidobacterium longum alters gut luminal metabolism through modification of the gut microbial community ' () 28 Scientific Report : 13548.

Probiotic Bifidobacterium longum alters gut luminal metabolism through modification of the gut microbial communityScientific Report2813548)| false
• Search Google Scholar

Takachi, R., Tsubono, Y., Baba, K., Inoue, M., Sasazuki, S., Iwasaki, M. and Tsugane, S., 2011. Red meat intake may increase the risk of colon cancer in Japanese, a population with relatively low red meat consumption. Asia Pacific Journal of Clinical Nutrition 20: 603-612.

'Red meat intake may increase the risk of colon cancer in Japanese, a population with relatively low red meat consumption ' () 20 Asia Pacific Journal of Clinical Nutrition : 603 -612.

Red meat intake may increase the risk of colon cancer in Japanese, a population with relatively low red meat consumptionAsia Pacific Journal of Clinical Nutrition20603612)| false
• Search Google Scholar

Tamaki, H., Nakase, H., Inoue, S., Kawanami, C., Itani, T., Ohana, M., Kusaka, T., Uose, S., Hisatsune, H., Tojo, M., Noda, T., Arasawa, S., Izuta, M., Kubo, A., Ogawa, C., Matsunaka, T., Shibatouge, M., 2016. Efficacy of probiotic treatment with Bifidobacterium longum 536 for induction of remission in active ulcerative colitis: a randomized, double-blinded, placebo-controlled multicenter trial. Digestive Endoscopy 28: 67-74.

'Efficacy of probiotic treatment with Bifidobacterium longum 536 for induction of remission in active ulcerative colitis: a randomized, double-blinded, placebo-controlled multicenter trial ' () 28 Digestive Endoscopy : 67 -74.

Efficacy of probiotic treatment with Bifidobacterium longum 536 for induction of remission in active ulcerative colitis: a randomized, double-blinded, placebo-controlled multicenter trialDigestive Endoscopy286774)| false
• Search Google Scholar

Thaiss, C.A., Zeevi, D., Levy, M., Zilberman-Schapira, G., Suez, J., Tengeler, A.C., Abramson, L., Katz, M.N., Korem, T., Zmora, N., Kuperman, Y., Biton, I., Gilad, S., Harmelin, A., Shapiro, H., Halpern, Z., Segal, E. and Elinav, E., 2014. Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis. Cell 159: 514-529.

'Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis ' () 159 Cell : 514 -529.

Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasisCell159514529)| false
• Search Google Scholar

Veiga, P., Pons, N., Agrawal, A., Oozeer, R., Guyonnet, D., Brazeilles, R., Faurie, J.M., Van Hylckama, Vlieg, J.E., Houghton, L.A., Whorwell, P.J., Ehrlich, S.D. and Kennedy, S.P., 2014. Changes of the human gut microbiome induced by a fermented milk product. Scientific Report 11: 6328.

'Changes of the human gut microbiome induced by a fermented milk product ' () 11 Scientific Report : 6328.

Changes of the human gut microbiome induced by a fermented milk productScientific Report116328)| false
• Search Google Scholar

Voigt, R.M., Forsyth, C.B., Green, S.J., Mutlu, E., Engen, P., Vitaterna, M.H., Turek, F.W. and Keshavarzian, A., 2014. Circadian disorganization alters intestinal microbiota. PLoS ONE 9: e97500.

'Circadian disorganization alters intestinal microbiota ' () 9 PLoS ONE : e97500.

Circadian disorganization alters intestinal microbiotaPLoS ONE9e97500)| false
• Search Google Scholar

Wang, L., Christophersen, C.T., Sorich, M.J., Gerber, J.P., Angley, M.T. and Conlon, M.A., 2013. Increased abundance of Sutterella spp. and Ruminococcus torques in feces of children with autism spectrum disorder. Molecular Autism 4: 42.

'Increased abundance of Sutterella spp. and Ruminococcus torques in feces of children with autism spectrum disorder ' () 4 Molecular Autism : 42.

Increased abundance of Sutterella spp. and Ruminococcus torques in feces of children with autism spectrum disorderMolecular Autism442)| false
• Search Google Scholar

Wu, G.D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y.-Y., Keilbaugh, S.A., Bewtra, M., Knights, D., Walters, W.A., Knight, R., Sinha, R., Gilroy, E., Gupta, K., Baldassano, R., Nessel, L., Li, H., Bushman, F.D. and Lewis, J.D., 2011. Linking long-term dietary patterns with gut microbial enterotypes. Science 334: 105-108.

'Linking long-term dietary patterns with gut microbial enterotypes ' () 334 Science : 105 -108.

Linking long-term dietary patterns with gut microbial enterotypesScience334105108)| false
• Search Google Scholar

Xiao, J.Z., Kondo, S., Yanagisawa, N., Takahashi, N., Odamaki, T., Iwabuchi, N., Miyaji, K., Iwatsuki, K., Togashi, H., Enomoto, K. and Enomoto, T., 2006. Probiotics in the treatment of Japanese cedar pollinosis: a double-blind placebo-controlled trial. Clinical Experimental Allergy 36: 1425-1435.

'Probiotics in the treatment of Japanese cedar pollinosis: a double-blind placebo-controlled trial ' () 36 Clinical Experimental Allergy : 1425 -1435.

Probiotics in the treatment of Japanese cedar pollinosis: a double-blind placebo-controlled trialClinical Experimental Allergy3614251435)| false
• Search Google Scholar

Yaeshima, T., Takahashi, S., Matsumono, N., Ishibashi, N., Hayasawa, H. and Iino, H., 1997. Effect of yogurt containing Bifidobacterium longum BB536 on the intestinal environment, fecal characteristics and defecation frequency: a comparison with standard yogurt. Bioscience and Microflora 16: 73-77.

'Effect of yogurt containing Bifidobacterium longum BB536 on the intestinal environment, fecal characteristics and defecation frequency: a comparison with standard yogurt ' () 16 Bioscience and Microflora : 73 -77.

Effect of yogurt containing Bifidobacterium longum BB536 on the intestinal environment, fecal characteristics and defecation frequency: a comparison with standard yogurtBioscience and Microflora167377)| false
• Search Google Scholar

Yokota, A., Fukiya, S., Ooka, T., Ogura, Y., Hayashi, T. and Ishizuka, S., 2012. Is bile acid a determinant of the gut microbiota on a high-fat diet? Gut Microbes 3: 455-459.

'Is bile acid a determinant of the gut microbiota on a high-fat diet? ' () 3 Gut Microbes : 455 -459.

Is bile acid a determinant of the gut microbiota on a high-fat diet?Gut Microbes3455459)| false
• Search Google Scholar

Zhao, J., Murray, S. and Lipuma, J.J., 2014. Modeling the impact of antibiotic exposure on human microbiota. Scientific Reports 4: 4345.

'Modeling the impact of antibiotic exposure on human microbiota ' () 4 Scientific Reports : 4345.

Modeling the impact of antibiotic exposure on human microbiotaScientific Reports44345)| false
• Search Google Scholar